| The Night Before Christmas in Wonderland | 2024 | Actress | Queen of Hearts |
| Secret Invasion | 2023 | Actress | G'iah |
| The Pod Generation | 2023 | Actress | Rachel Novy |
| The Amazing Maurice | 2022 | Actress | Malicia (voice) |
| National Theatre Live: The Seagull | 2022 | Actress | Nina |
| Last Christmas | 2019 | Actress | Kate |
| Above Suspicion | 2019 | Actress | Susan Smith |
| Game of Thrones | 2011–2019 | Actress | Daenerys Targaryen |
| Leading Lady Parts | 2018 | Actress | Actress 1 |
| Solo: A Star Wars Story | 2018 | Actress | Qi'ra |
| Dolce & Gabanna: The One Video | 2017 | Actress | Emilia Clarke |
| Thunderbirds Are Go | 2017 | Actress | Doyle (voice) |
| The One | 2017 | Actress | Passer-by |
| Voice from the Stone | 2017 | Actress | Verena |
| Animals. | 2017 | Actress | Lumpy (voice) |
| Me Before You | 2016 | Actress | Lou Clark |
| Robot Chicken | 2016 | Actress | Bridget |
| Terminator Genisys | 2015 | Actress | Sarah Connor |
| Coldplay's Game of Thrones: The Musical | 2015 | Actress | Emilia Clarke |
| Game of Thrones: A Telltale Games Series | 2014 | Actress | Daenerys Targaryen (voice) |
| Dom Hemingway | 2013 | Actress | Evelyn |
| Futurama | 2013 | Actress | Marianne (voice) |
| Shackled | 2012 | Actress | Malu |
| Spike Island | 2012 | Actress | Sally |
| Triassic Attack | 2010 | Actress | Savannah |
| Drop the Dog | 2009 | Actress | Julie |
| Doctors | 2009 | Actress | Saskia Mayer |
| The Night Before Christmas in Wonderland | 2024 | Producer | executive producer |
| The Pod Generation | 2023 | Producer | executive producer |
| Last Christmas: Emilia Sings | 2019 | Soundtrack | performer: "Last Christmas" |
| Last Christmas | 2019 | Soundtrack | performer: "Jingle Bells", "Deck the Halls", "Last Christmas" (uncredited) |
| Dom Hemingway | 2013 | Soundtrack | performer: "Fisherman's Blues" |
| Harper's Bazaar UK TV Series | 2023 | Self | Self |
| Marvel Studios: Assembled | 2023 | Self | Self |
| Entertainment Tonight | 2014–2023 | Self | Self |
| Access Hollywood | 2016–2023 | Self | Self |
| Burning Questions | 2023 | Self | Self |
| Extra | 2016–2023 | Self | Self |
| Dish Nation | 2023 | Self | Self |
| Variety Studio | 2023 | Self | Self |
| THR Studio at Park City TV Mini Series | 2023 | Self | Self |
| The Tonight Show Starring Jimmy Fallon | 2014–2021 | Self | Self - Guest |
| Live with Kelly and Mark | 2013–2021 | Self | Self - Guest |
| Texting with theSkimm TV Series | 2021 | Self | Self |
| Hollywood Insider | 2019–2021 | Self | Self |
| AFI Movie Club | 2020 | Self | Self |
| EE British Academy Film Awards | 2020 | Self | Self - Presenter |
| Last Christmas: Love Letter to London | 2019 | Self | Self |
| Last Christmas: George Michael | 2019 | Self | Self |
| Last Christmas: Emilia Sings | 2019 | Self | Self |
| The Arts Hour Podcast Series | 2019 | Self | Self - Guest |
| TV Patrol | 2018–2019 | Self | Self |
| Konbini | 2018–2019 | Self | Self |
| Armchair Expert with Dax Shepard | 2019 | Self | Self |
| Good Morning Britain | 2019 | Self | Self |
| This Morning | 2019 | Self | Self - Guest |
| Celebrity Page | 2018–2019 | Self | Self |
| Good Morning America | 2015–2019 | Self | Self - Guest |
| The Graham Norton Show | 2015–2019 | Self | Self - Guest |
| Jacksepticeye | 2019 | Self | Self |
| The 71st Primetime Emmy Awards | 2019 | Self | Self - Nominee & Presenter |
| Close Up with the Hollywood Reporter | 2019 | Self | Self |
| Variety Studio: Actors on Actors | 2016–2019 | Self | Self |
| Game of Thrones: The Last Watch | 2019 | Self | Self |
| NBA on ESPN | 2019 | Self | Self |
| Jimmy Kimmel Live! | 2012–2019 | Self | Self - Guest |
| 60 Minutes | 2019 | Self | Self - Actress (segment "Game of Thrones") |
| CBS News Sunday Morning with Jane Pauley | 2019 | Self | Self - Guest |
| Saturday Night Live | 2019 | Self | Self - Audience Member Asking Questions (uncredited) |
| The Late Show with Stephen Colbert | 2016–2019 | Self | Self - Rescue Dog Rescue |
| 2019 Vanity Fair Oscar Party | 2019 | Self | Self |
| E! Live from the Red Carpet | 2014–2019 | Self | Self |
| The Oscars | 2019 | Self | Self - Presenter |
| Solo: The Director & Cast Roundtable | 2018 | Self | Self |
| The 70th Primetime Emmy Awards | 2018 | Self | Self - Presenter |
| LADbible Entertainment TV Series | 2018 | Self | Self |
| The IMDb Show | 2018 | Self | Self - Guest |
| Late Night with Seth Meyers | 2016–2018 | Self | Self - Guest |
| Movie Surfers | 2018 | Self | Self |
| The 23rd Annual Critics' Choice Awards | 2018 | Self | Self |
| 75th Golden Globe Awards | 2018 | Self | Self - Presenter |
| Rolling Stone: The First Time with Emilia Clarke | 2017 | Self | Self |
| Me Before You: Deleted Scenes | 2016 | Self | Lou Clark (uncredited) |
| Me Before You: Outtakes | 2016 | Self | Self |
| Me Before You: From Page to Screen | 2016 | Self | Self |
| The 68th Primetime Emmy Awards | 2016 | Self | Self - Nominee |
| Made in Hollywood: Teen Edition | 2016 | Self | Self |
| Made in Hollywood | 2015–2016 | Self | Self |
| The Insider | 2014–2016 | Self | Self |
| WGN Morning News | 2016 | Self | Self |
| Teen Vogue's Emilia Clarke Gives Advice to Her 18 Year Old Self Video | 2016 | Self | Self |
| Emilia Clarke's Valley Girl Voice Video | 2016 | Self | Self |
| The Late Late Show with James Corden | 2016 | Self | Self - Guest |
| Conan | 2016 | Self | Self - Guest |
| The Ellen DeGeneres Show | 2016 | Self | Self - Guest |
| 2016 MTV Movie Awards | 2016 | Self | Self - Presenter |
| The EE British Academy Film Awards | 2016 | Self | Self - Presenter |
| Reset the Future: Constructing 'Terminator Genisys' Video | 2015 | Self | Self |
| Terminator Genisys: Infiltration and Termination | 2015 | Self | Self |
| Terminator Genisys: Family Dynamics | 2015 | Self | Self |
| The 67th Primetime Emmy Awards | 2015 | Self | Self - Nominee (credit only) |
| Unscripted | 2015 | Self | Self |
| Emilia Clarke Can Talk Like a Valley Girl | 2015 | Self | Self |
| Rencontres de cinéma | 2015 | Self | Self |
| Le grand journal de Canal+ | 2015 | Self | Self |
| MTV After Hours with Josh Horowitz | 2015 | Self | Self |
| Red Nose Day | 2015 | Self | Self |
| British Vogue TV Series | 2015 | Self | Self |
| Juego de Tronos: Especial Reino Español | 2015 | Self | Self |
| Game of Thrones: A Day in the Life | 2015 | Self | Self |
| 71st Golden Globe Awards | 2014 | Self | Self - Presenter (uncredited) |
| The 65th Primetime Emmy Awards | 2013 | Self | Self - Nominee |
| Late Night with Jimmy Fallon | 2013 | Self | Self - Guest |
| The Broadway.com Show | 2013 | Self | Self |
| Late Show with David Letterman | 2013 | Self | Self - Guest |
| Game of Thrones: Season 2 - Character Profiles | 2013 | Self | Self |
| The 64th Primetime Emmy Awards | 2012 | Self | Self |
| Comic Con 2012 Live | 2012 | Self | Self |
| Game of Thrones: Destinations of Season 2 | 2012 | Self | Daenerys Targaryen |
| Game of Thrones: You Win or You Die - Inside the HBO Series | 2012 | Self | Self |
| Game of Thrones: Season 2 - Invitation to the Set | 2012 | Self | Self |
| Game of Thrones: Season 2 - In Production: Croatia | 2012 | Self | Self |
| 18th Annual Screen Actors Guild Awards | 2012 | Self | Self |
| Game of Thrones: Costumes | 2011 | Self | Self |
| The Project | 2024 | Archive Footage | Self (archive footage) |
| The Ben Shapiro Show | 2024 | Archive Footage | Self (archive footage) |
| Looper | 2023 | Archive Footage | Self (archive footage) |
| Disparu | 2023 | Archive Footage | Self (archive footage) |
| Entertainment Tonight | 2016–2023 | Archive Footage | Self (archive footage) |
| Jeremy Vine | 2023 | Archive Footage | Self (archive footage) |
| Front Row | 2020 | Archive Footage | Self - Actor (archive footage) |
| Extra | 2015–2019 | Archive Footage | Self (archive footage) |
| 60 Minutes | 2019 | Archive Footage | Self - Actress (segment "Game of Thrones") (archive footage) |
| Celebrity Page | 2015–2019 | Archive Footage | Self (archive footage) |
| Anatomy of A Failure TV Series | 2018 | Archive Footage | Self (archive footage) |
| Le fond de l'affaire Podcast Series | 2017 | Archive Footage | (archive footage) |
| The Insider | 2017 | Archive Footage | Self (archive footage) |
| Live with Kelly and Mark | 2016 | Archive Footage | Self (archive footage) |